Class jalview.analysis.DnaTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testCompareCodonPos | 0.003s | passed |
| testCompareCodonPos_isSymmetric | 0.002s | passed |
| testCompareCodonPos_oneOnly | 0s | passed |
| testConvertCodon | 0s | passed |
| testGetComplement | 0s | passed |
| testReverseCdna | 0s | passed |
| testReverseSequence | 0s | passed |
| testTranslateCdna_hiddenColumns | 0.001s | passed |
| testTranslateCdna_sequenceOrderIndependent | 0.001s | passed |
| testTranslateCdna_simple | 0.001s | passed |
| testTranslateCdna_withUntranslatableCodons | 0.006s | passed |
| testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 0.031s | passed |
Standard output
K: AAA [0, 1, 2] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AAA [0, 1, 2] K: AA-A [0, 1, 3] G: GGG [0, 1, 2] K: AAA [0, 1, 2] G: GG-G [0, 1, 3] K: A-AA [0, 2, 3] G: GG-G [0, 1, 3] K: A-A-A [0, 2, 4] G: GG-G [0, 1, 3] K: A-AA [0, 2, 3] G: GG--G [0, 1, 4] K: AA-A [0, 1, 3] G: G-GG [0, 2, 3] K: AA--A [0, 1, 4] G: G-GG [0, 2, 3] K: AAA [0, 1, 2] G: G-GG [0, 2, 3] K: -AAA [1, 2, 3] G: G-GG [0, 2, 3] K: -AA-A [1, 2, 4] G: G-GG [0, 2, 3] K: -AAA [1, 2, 3] G: G-G-G [0, 2, 4] K: -A-AA [1, 3, 4] G: G-G-G [0, 2, 4] K: -A-A-A [1, 3, 5] G: G-G-G [0, 2, 4] K: -A-AA [1, 3, 4] G: G-G--G [0, 2, 5] K: -AA-A [1, 2, 4] G: G--GG [0, 3, 4] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] K: -AAA [1, 2, 3] G: G--GG [0, 3, 4] K: A-AA [0, 2, 3] G: -GGG [1, 2, 3] K: A-A-A [0, 2, 4] G: -GGG [1, 2, 3] K: A-AA [0, 2, 3] G: -GG-G [1, 2, 4] K: A--AA [0, 3, 4] G: -GG-G [1, 2, 4] K: A--AA [0, 3, 4] G: -GGG [1, 2, 3] K: A--AA [0, 3, 4] G: -GG--G [1, 2, 5] K: AA-A [0, 1, 3] G: -GGG [1, 2, 3] K: AA--A [0, 1, 4] G: -GGG [1, 2, 3] K: AAA [0, 1, 2] G: -GGG [1, 2, 3] K: AAA [0, 1, 2] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AAA [0, 1, 2] K: AA-A [0, 1, 3] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AA-A [0, 1, 3] K: AAA [0, 1, 2] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: AAA [0, 1, 2] K: A-AA [0, 2, 3] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: A-AA [0, 2, 3] K: A-A-A [0, 2, 4] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: A-A-A [0, 2, 4] K: A-AA [0, 2, 3] G: GG--G [0, 1, 4] K: GG--G [0, 1, 4] G: A-AA [0, 2, 3] K: AA-A [0, 1, 3] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AA-A [0, 1, 3] K: AA--A [0, 1, 4] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AA--A [0, 1, 4] K: AAA [0, 1, 2] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AAA [0, 1, 2] K: -AAA [1, 2, 3] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: -AAA [1, 2, 3] K: -AA-A [1, 2, 4] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: -AA-A [1, 2, 4] K: -AAA [1, 2, 3] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -AAA [1, 2, 3] K: -A-AA [1, 3, 4] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -A-AA [1, 3, 4] K: -A-A-A [1, 3, 5] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -A-A-A [1, 3, 5] K: -A-AA [1, 3, 4] G: G-G--G [0, 2, 5] K: G-G--G [0, 2, 5] G: -A-AA [1, 3, 4] K: -AA-A [1, 2, 4] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AA-A [1, 2, 4] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AA--A [1, 2, 5] K: -AAA [1, 2, 3] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AAA [1, 2, 3] K: A-AA [0, 2, 3] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A-AA [0, 2, 3] K: A-A-A [0, 2, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A-A-A [0, 2, 4] K: A-AA [0, 2, 3] G: -GG-G [1, 2, 4] K: -GG-G [1, 2, 4] G: A-AA [0, 2, 3] K: A--AA [0, 3, 4] G: -GG-G [1, 2, 4] K: -GG-G [1, 2, 4] G: A--AA [0, 3, 4] K: A--AA [0, 3, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A--AA [0, 3, 4] K: A--AA [0, 3, 4] G: -GG--G [1, 2, 5] K: -GG--G [1, 2, 5] G: A--AA [0, 3, 4] K: AA-A [0, 1, 3] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AA-A [0, 1, 3] K: AA--A [0, 1, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AA--A [0, 1, 4] K: AAA [0, 1, 2] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AAA [0, 1, 2] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] >SEQ1/1-12 CAGTTCGTAGAA >SEQ2/1-12 TAGTTCGTAGAA >SEQ3/1-12 CAGTTCGTAGAA >SEQ4/1-12 CAGTTCGTAGAA >SEQ5/1-12 CAGTTCGTAGAA >SEQ6/1-12 CAGTTCGTAGAA >SEQ7/1-12 CAGTTCGTAGAA >SEQ8/1-12 CAGTTCGTAGAA Original >SEQ1/1-4 QFVE >SEQ2/1-4 *FVE >SEQ3/1-4 QFVE >SEQ4/1-4 QFVE >SEQ5/1-4 QFVE >SEQ6/1-4 QFVE >SEQ7/1-4 QFVE >SEQ8/1-4 QFVE Sorted >SEQ7/1-4 QFVE >SEQ8/1-4 QFVE >SEQ4/1-4 QFVE >SEQ5/1-4 QFVE >SEQ3/1-4 QFVE >SEQ1/1-4 QFVE >SEQ2/1-4 *FVE >SEQ6/1-4 QFVE
Standard error
trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete 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contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. Jul 02, 2023 10:12:00 AM compbio.ws.client.Jws2Client connect INFO: Connected successfully! trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon.